Table 2 The enriched pathways for up-regulated genes (FDR< 0.05)
From: Identification of biomarkers for hepatocellular carcinoma using network-based bioinformatics methods
Pathway ID | Pathway name | Up genes | P | FDR |
|---|---|---|---|---|
hsa04110 | Cell cycle | 36 | 1.08E-11 | 1.78E-09 |
hsa03030 | DNA replication | 17 | 5.07E-09 | 4.16E-07 |
hsa03050 | Proteasome | 14 | 1.80E-05 | 9.82E-04 |
hsa03410 | Base excision repair | 12 | 3.70E-05 | 0.0015 |
hsa03420 | Nucleotide excision repair | 13 | 1.50E-04 | 0.0049 |
hsa00970 | Aminoacyl-tRNA biosynthesis | 12 | 3.31E-04 | 0.0090 |
hsa04120 | Ubiquitin mediated proteolysis | 24 | 3.43E-04 | 0.0080 |
hsa03430 | Mismatch repair | 8 | 0.0014 | 0.0280 |
hsa03440 | Homologous recombination | 9 | 0.0014 | 0.0250 |
hsa04114 | Oocyte meiosis | 19 | 0.0016 | 0.0256 |
hsa03040 | Spliceosome | 21 | 0.0020 | 0.0292 |
hsa04914 | Progesterone-mediated oocyte maturation | 16 | 0.0024 | 0.0323 |